The Cell-State
Observatory

Following the dynamics of cellular change.

A research journey through RNA velocity, shared cell states and the signals that connect them. Built with European research infrastructure.

Public project recordSeptember 2026 — August 2027

CELL-STATE LANDSCAPE · DENSITY OF A PUBLISHED EMBEDDING

Project trajectory

FROM THE PROJECT PLAN

CompleteIn progressPlanned

12 months · 5 research phases

Dataset atlas

PUBLIC DATA / PUBLISHED EMBEDDINGS

Benchmark coverage

EXECUTION STATUS / NO SCORES

Fifteen methods against thirteen inputs. This grid shows only whether a run executed, never how it scored. It is the shape of the benchmark, not its outcome.

completedfailedqueuedintegration pending

Inside the state space

PUBLISHED DENSITY / SYNTHETIC FLOW

Research infrastructure

EnvironmentCINECA GAIA Cloud

Allocated compute96 vCPU · 336 GB RAM

Storage allocation1.5 TB

Method panel9 integrated of 15 planned

Software isolation9 environments

Run records95 of 195 runs

Scientific releaseForthcoming

From the research journal

Short updates from a developing research programme. Steps and obstacles, including our own mistakes; no findings.

Process, not results

The Cell-StateObservatory